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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGTgctctctagtacggtggtaacgaatgcgtcttctccccttctcgtctttaatcgattttcttcaacacatcttcactgcgacattggatgtaatttttcc...

Basic information

species Physcomitrella patens
transcript PP1S51_296V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S51_296V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 4
GGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGTgctctctagtacggtggtaacgaatgcgtcttctccccttctcgtctttaatcgattttcttcaacacatcttcactgcgacattggatgtaatttttcc----------
                      |||| ||||| || || ||||| |||||||| || || |||||||||||||| |||||||| || || || || || ||    || |||||||| ||||| | ||  |  |  | ||||     |   | |  ||| ||||    || |        | | ||  | |||| |              
----------------------AGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttgattgcgttcta----tcggttgcctttgttcagattatttgggtgttaaaaatg--tttaatctgaaagagaaatcag

upper sequence: PP1S51_296V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g52840.1 (Oryza sativa), 5'ss of exon 4
GGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGTgctctctagtacggtggtaacgaatgcgtcttctccccttct------cgtctttaatcgattttctt-----caacacatcttcactgcgacattggatgtaatttttcc----------------------------------------------------
                      |||| ||||| || || ||||| |||||||| || || |||||||||||||| |||||||| || || || || || ||    || |||||||| ||||| | ||  |  |  | ||||       | ||||  ||   ||  ||       | | || || | |  || |  | |   | |   |                                                      
----------------------AGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagtgcctgatgggagtgaatgatgtgaatttctggtggctctgggttttccttgcgtgcag

upper sequence: PP1S51_296V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 4
GGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGTgctctctagtacggtggtaacgaatgcgtcttctccccttc--tcgtctttaatcgattttcttcaacacatcttcactgcgacattggatgtaatttttcc------------------------------------------------
                      ||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| || || || ||||| ||    || ||||| || || || | |  |    | |  ||  | ||| ||       ||  ||||    |    | |    | ||||  || | | | |                                                  
----------------------AGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtg-actgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcag

upper sequence: PP1S51_296V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 4
GGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGTgctctctagtacggtggtaacgaatgcgt-cttctcccctt------ctcgtctttaatc----gattttcttcaa--cacatcttcactgcga-cattggatgtaatttttcc-------------------
                      | |||||||||||  | || || ||||| ||||| || || || ||||| ||||| ||||||||||||||||||||||||   || || || || ||||| |  || | |||    ||       | || || |||      |||| ||  |    |    ||    | ||   |||  | |   ||| |                    
----------------------AAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTGCTAGATACTATGGAGGAAACGAgtatgtgcatctgtttttgaatgttttgttttgaatttagaaatttactgtagattatggattgttggtgagtgttgattttgggtttacgtgtataattcggcgcttag