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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGACTTTCCTGGACGTGGTTGTCTTTGGGAAACCTTCCGTGATCGGTGCAGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCTGGTGCAGgtaatttagtatctgcaattattagttaactgtgtctaatgatttatcctgtacggaaactgaattgatcgccacatcaagcttttgcagctctgactcatttccactgaacttttcttttgttttgcag

Basic information

species Physcomitrella patens
transcript PP1S4_201V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S4_201V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G043193_T01 (Zea mays), 5'ss of exon 1
GTGTGGACTTTCCTGGACGTGGTTGTCTTTGGGAAACCTTCCGTGATCGGTGCAGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCTGGTGCAGgt-aatttagtatctgcaattattagttaactgtgtctaatgatttatcctgtacggaaactgaattgatcgccacatcaagcttttgcagctctgactcatttccactgaacttttcttttgttttgcag
 |||||||  |||| |||||  |  |||| ||||| || || ||||||||||| |||||||| |||||||| || |||||   |||||| ||||| |||||| | |  |||| |      | |   ||  ||   |     |||  |  |  ||     |   ||||         ||  |  || |||| ||   |||  ||   | |                      
ATGTGGACCCTCCTTGACGTCTTCTTCTTCGGGAAGCCGTCGGTGATCGGTGCTGTGCAGGGCATGATCACCGGCCTTGTGTGCATCACGCCTGGCGCAGgtcagtagagtagccttgcctttctcttcgctccattggcagatggactccctaatactaacaaatt---------atataagttgtgcaacttgcactggttggtaat----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18340694|gb|BJ172724.1|BJ172724
EST:     TGCAGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCTGGTGCAG                         GACTTGTCCAAGGATGGGCGGCGCTCGTCATGGGAGTCTTTGCAGGATCAA
genomic: TGCAGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCTGGTGCAGgtaatttagt ... tgttttgcagGACTTGTCCAAGGATGGGCGGCGCTCGTCATGGGAGTCTTTGCAGGATCAA