1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAATCTATTACTATAAATGTGGAGGTGCAGGGAAAGAATACAAGTTCAAGACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgtttcatatttacgcttcatatatcttactctacatcaatgcatatgatatgcgaggaggataagtaaacgatcgacaggaacttactgtagtg...
species | Physcomitrella patens |
transcript | PP1S49_289V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACCCCTCCACCTTTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTG GGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACAEST: gi|162156192|gb|FC332567.1|FC332567
genomic: GACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgttt ... atctatgcagGGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACA
EST: GACCCCTCCACCTTTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTG GGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACAEST: gi|162237927|gb|FC412528.1|FC412528
genomic: GACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgttt ... atctatgcagGGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACA
EST: GACCCCTCCACCTTTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTG GGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACAEST: gi|162158209|gb|FC335252.1|FC335252
genomic: GACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgttt ... atctatgcagGGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACA
EST: GACCCCTCCACCTTTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTG GGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACA
genomic: GACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgttt ... atctatgcagGGGACTTGGGTCAAACTGAATGGACGAAATCTACACTGAGTCACATAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATCTATTACTATAAATGTGGAGGTGCAGGGAAAGAATACAAGTTCAAGACCCCTCCACCTGTAGGGCGGAATGTTCCCATCAAGTTTGCAGCTGTTGgtaagtgtttcatatttacgcttcatatatcttactctacatcaatgcatatgatatgcgaggaggataagtaaacgatcgacaggaacttactgtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT