1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGTGGTGGTGCAGTCGCTGTGAGTGCAGCACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttctaattatgagttacagtggaaaatgcacctgtcatgtggtttatcctctcacgttacattctgtgcaacgtttttcatctatgcgggtttca...
species | Physcomitrella patens |
transcript | PP1S49_284V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|67709489|gb|BJ965305.1|BJ965305
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|162265808|gb|FC442395.1|FC442395
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|18368145|gb|BJ200230.1|BJ200230
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|18343044|gb|BJ175081.1|BJ175081
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|67720340|gb|BJ970599.1|BJ970599
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|37822193|gb|BJ580259.1|BJ580259
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|67573418|gb|BJ946242.1|BJ946242
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|18327667|gb|BJ159670.1|BJ159670
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGCTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|18335904|gb|BJ167925.1|BJ167925
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATEST: gi|162265807|gb|FC442394.1|FC442394
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
EST: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAG GAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
genomic: CACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttcta ... aactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGGTGGTGCAGTCGCTGTGAGTGCAGCACCTGCTGCTTCCGCTGCTGTTGAGGCACCCAAGGAAGAGGAGAAGAAGgtaagttctaattatgagttacagtggaaaatgcacctgtcatgtggtttatcctctcacgttacattctgtgcaacgtttttcatctatgcgggtttca
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG