1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGAAACGGTGGGGTTTTGCTGGTATGCCCGCATCTCATGGTGCTTCACTCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAGgtaagtcaccgttctggtcatctttccttgagtcaattgtgtgctttcaagttgtaactctggatgcattgttcatttccatcaactagaatctagtgtgagtgaaagtgtatcaattaaatggaagtggagcgtattgatgctagatttaatggatggttttcagtacag
species | Physcomitrella patens |
transcript | PP1S49_269V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAG GTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACAEST: gi|208368314|gb|DC935669.1|DC935669
genomic: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAGgtaagtcacc ... ttcagtacagGTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACA
EST: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAG GTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACAEST: gi|208390190|gb|DC949472.1|DC949472
genomic: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAGgtaagtcacc ... ttcagtacagGTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACA
EST: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAG GTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACAEST: gi|18338855|gb|BJ170880.1|BJ170880
genomic: TCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAGgtaagtcacc ... ttcagtacagGTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACA
EST: CAGGATCCTGGCAAG GTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACA
genomic: CAGGATCCTGGCAAGgtaagtcacc ... ttcagtacagGTCTTTAAGGGCAAGAAGATGGCAGGGCATATGGGTGCGGTGAGGAGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAAACGGTGGGGTTTTGCTGGTATGCCCGCATCTCATGGTGCTTCACTCTCACATCGAAGTTTAGGGTCCACTGGTGGACGTCAGGATCCTGGCAAGgtaagtcaccgttctggtcatctttccttgagtcaattgtgtgctttcaagttgtaactctggatgcattgttcatttccatcaactagaatctagtgtgagtgaaagtgtatcaattaaatggaagtggagcgtattgatgctagatttaatggatggttttcagtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA