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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAATTCCGAGTCGACCCTTACGGAAATGTTGTGCACTGGAATGCCGATCCTTCGTCGCCGCTCGCCTGGGACATCGATCACTGGTTCCCTCAGTCACgtaagccctctaaaactgcaactatgcacaaattcttgcttccttccttttgcatggtcggtgccggatttccgttgctggcgctggagtacgatcgacagtcctgcggtaccacaagattttcaatggttttggatgatggaaatttcag

Basic information

species Physcomitrella patens
transcript PP1S49_258V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_258V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G347979_T01 (Zea mays), 5'ss of exon 4
GAGAAATTCCGAGTCGACCCTTACGGAAATGTT--GTGCACTGGAATGCCGATCCTTCGTCGCCGCTCGCCTGGGACATCGATCACTGGTTCCCTCAGTCACgtaagccctctaaaactgcaactatgcacaaattcttgcttccttccttttgcatggtcggtgccggatttccgttgctggcgctggagtacgatcgac-agtcctgcggtaccacaagattttcaatggttttggatgatggaaatttcag
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--TCGATCTGGCGCTCTTCCGGGTGGACGCGTATGGTCTACCTGCACGCCGACTTTGCCTCGCCCCTCGCCTGGGACATCGACCACTGGTTCCCGTGCGCCAgtaag-------gaatcgctacgat---ctgattattgtttttcacttcttt---------tgcttgtttttcttttcagactc--gaacactcttactgagtactg----accgct---tcatcggtggttctggatgtttgcag------