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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTGGGAGAAGTGGCCAACTTCACTGCCTACGCGTTTGCTCCGGCTGTCTTGGTCACTCCGCTTGGCGCACTGAGCATAATAGTCAGgttcgtcttttggtgactcgtagtggtagcacacttcatttccgggttgcaagggttcattttgatttatgtatttcttgatgcag

Basic information

species Physcomitrella patens
transcript PP1S49_181V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 5'ss of exon 3
TGATTGTGGGAGAAGTGGCCAACTTCACTGCCTACGCGTTTGCTCCGGCTGTCTTGGTCACTCCGCTTGGCGCACTGAGCATAATAGTCAGgttcgtct----tttggtgactcgtagtggta--gcacacttcatttccgggt-tgcaagggttcattttgatttatgtatttcttgatgcag----------------------------
||||||| |||||| | ||||||||| | || || || |||||||| ||| ||||||||||||| ||||| ||||| ||||||||  ||||||  | ||    ||   ||||| | |||||||  | | | |    ||| | |  |      ||  || ||  | | ||||| |     |  |                             
TGATTGTTGGAGAAATCGCCAACTTCGCAGCTTATGCTTTTGCTCCTGCTATCTTGGTCACTCCACTTGGTGCACTTAGCATAATTATCAGgtaagactagaattgtatgact-gaagtggtatggtaaaatcttcttctgtgcatattcctgtaaatcttcttctgtgtatattcctgtaaatctgataatatcggcatcccttcttacag

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G110398_T01 (Zea mays), 5'ss of exon 3
TGATTGTGGGAGAAGTGGCCAACTTCACTGCCTACGCGTTTGCTCCGGCTGTCTTGGTCACTCCGCTTGGCGCACTGAGCATAATAGTCAGgttcgtcttttggtgactcgtagtggtagcacacttcatttccgggt-tgcaagggttcattttgatttatgtatttcttgatgcag----------------
||||||| ||||||||||| |||||  | || || || |||||||| ||| |||||||||| || ||||| ||||| ||||| ||| | ||||  |   | |  |  |     ||  |    |   | || ||    | | |    |||| || |  ||| |    | |||    ||                 
TGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaatataatt-catactgtcttgatgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacagtgctgctcttgcag

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G110398_T02 (Zea mays), 5'ss of exon 3
TGATTGTGGGAGAAGTGGCCAACTTCACTGCCTACGCGTTTGCTCCGGCTGTCTTGGTCACTCCGCTTGGCGCACTGAGCATAATAGTCAGgttcgtcttttggtgactcgtagtggtagcacacttcatttccgggt-tgcaagggttcattttgatttatgtatttcttgatgcag--
||||||| ||||||||||| |||||  | || || || |||||||| ||| |||||||||| || ||||| ||||| ||||| ||| | ||||  |   | |  |  |     ||  |    |   | || ||    | | |    |||| || |  ||| |    | |||    ||   
TGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaatataatt-catactgtcttgatgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacag