1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggacttcgacttttctcgttgcatttggacagtgtatgtgattcatgtgtttgtttgttatttcaaaggtattttcaatagtttagacttgacaatatttttattcgtctcttacttgtcatcgctgcgatttgaatcatacctgcag
species | Physcomitrella patens |
transcript | PP1S497_3V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|208381290|gb|DC919180.1|DC919180
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|208368792|gb|DC943792.1|DC943792
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|37841425|gb|BJ599433.1|BJ599433
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: TTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|208362303|gb|DC954549.1|DC954549
genomic: TTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: TTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|100404070|gb|BY955240.1|BY955240
genomic: TTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|208378412|gb|DC923055.1|DC923055
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|208362361|gb|DC954607.1|DC954607
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTCEST: gi|37845662|gb|BJ603670.1|BJ603670
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
EST: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG GTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
genomic: GGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggactt ... atacctgcagGTCTACTAGAAAATGGGAGTGAGGTTACTGTTGACGAGTTGGCTGTGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTGgtagggacttcgacttttctcgttgcatttggacagtgtatgtgattcatgtgtttgtttgttatttcaaaggtattttcaatagtttagacttgacaatatttttattcgtctcttacttgtcatcgctgcgatttgaatcatacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC