Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGCGTGGAACAGGGTCCTCAAGTGGACAAGGACCAGTTCCACAAGGTGCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaattagcatatctacgctccattcttaattcccacaattcagtcatcgatagcatttcgaatctcctcattttctaacaagaactggggcgttggtctgcag

Basic information

species Physcomitrella patens
transcript PP1S496_1V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842887|gb|BJ600895.1|BJ600895
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCC
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: gi|162225460|gb|FC400913.1|FC400913
EST:     GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCG-TTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37836698|gb|BJ594706.1|BJ594706
EST:     GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162167068|gb|FC342530.1|FC342530
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37850337|gb|BJ608345.1|BJ608345
EST:     GCTCGG--ATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208374997|gb|DC944792.1|DC944792
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162188157|gb|FC363923.1|FC363923
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208393943|gb|DC928723.1|DC928723
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208363675|gb|DC954646.1|DC954646
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208375074|gb|DC956442.1|DC956442
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37822382|gb|BJ580448.1|BJ580448
EST:     CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|67720332|gb|BJ970591.1|BJ970591
EST:     GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCATTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37846353|gb|BJ604361.1|BJ604361
EST:     GGATATGTNGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCA
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37833046|gb|BJ591058.1|BJ591058
EST:     CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCC
genomic: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: gi|208365050|gb|DC947314.1|DC947314
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18333503|gb|BJ165518.1|BJ165518
EST:     GGCATGNAACAGGGTGCCAACCTTATCACAG                         GTGNAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18340081|gb|BJ172109.1|BJ172109
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162208999|gb|FC385551.1|FC385551
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATTTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|22132544|gb|BQ827221.1|BQ827221
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGGCGGTTTGGG
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCG-TTTGGG
EST: gi|162258259|gb|FC434658.1|FC434658
EST:     GCTTGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37835215|gb|BJ593227.1|BJ593227
EST:     TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACNTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCC
genomic: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: gi|208350254|gb|DC925730.1|DC925730
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37850099|gb|BJ608107.1|BJ608107
EST:     GNTNGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37835398|gb|BJ593410.1|BJ593410
EST:     TCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: TCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208379348|gb|DC918992.1|DC918992
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18340986|gb|BJ173018.1|BJ173018
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208389120|gb|DC945696.1|DC945696
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208373045|gb|DC948810.1|DC948810
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18339993|gb|BJ172021.1|BJ172021
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGNAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162265227|gb|FC441314.1|FC441314
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208371953|gb|DC951930.1|DC951930
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162252633|gb|FC428664.1|FC428664
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162176558|gb|FC353027.1|FC353027
EST:     ACCTTATCACAG                         GTGGAGGTCG-TTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: ACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37826597|gb|BJ584609.1|BJ584609
EST:     ATGTCGAGAGCGGCATGGAACAGGGTGCCAACNTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: ATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37832111|gb|BJ590123.1|BJ590123
EST:     GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|67724035|gb|BJ974294.1|BJ974294
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162265226|gb|FC441313.1|FC441313
EST:     ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162262444|gb|FC439695.1|FC439695
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|67724124|gb|BJ974383.1|BJ974383
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|7067452|gb|AW497307.1|AW497307
EST:     GCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162184777|gb|FC361079.1|FC361079
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162206121|gb|FC383114.1|FC383114
EST:     GCTTGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162271487|gb|FC446436.1|FC446436
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|67720204|gb|BJ970463.1|BJ970463
EST:     GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162188156|gb|FC363922.1|FC363922
EST:     GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|19781668|gb|BQ039753.1|BQ039753
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162262443|gb|FC439694.1|FC439694
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162255667|gb|FC431665.1|FC431665
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208367149|gb|DC947841.1|DC947841
EST:     GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGANGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATNTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162191366|gb|FC367122.1|FC367122
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18334651|gb|BJ166668.1|BJ166668
EST:     ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37836673|gb|BJ594681.1|BJ594681
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208360110|gb|DC950153.1|DC950153
EST:     CTCGGATATGTCGAGAGCGGCATGGAACCAGGGTGCCAACNTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: CTCGGATATGTCGAGAGCGGCATGGAA-CAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37827826|gb|BJ585838.1|BJ585838
EST:     TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGACAACCATNTTNC
genomic: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: gi|162197029|gb|FC373369.1|FC373369
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162279856|gb|FC455140.1|FC455140
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208347226|gb|DC917157.1|DC917157
EST:     GCTCGGATATGTCGAGAGCGGCATGGANCAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18340698|gb|BJ172728.1|BJ172728
EST:     CGGCATGNAACAGGGTGCCAACCTTATCACAG                         GTGNAGGTCGTTTGGGNAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: CGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208369486|gb|DC948356.1|DC948356
EST:     GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18335342|gb|BJ167360.1|BJ167360
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162265112|gb|FC440991.1|FC440991
EST:     GCTCGGATATGTCGAGAGCGGCATGAAACAGGGCGCCAACCTTATCACAG                         GTGGAGGTCGTTTGTAGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162273408|gb|FC449857.1|FC449857
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208375117|gb|DC944856.1|DC944856
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|162271486|gb|FC446435.1|FC446435
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|208382024|gb|DC923492.1|DC923492
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37840676|gb|BJ598684.1|BJ598684
EST:     CGAGAGCGGCATGGAACAGGGTGCCANCCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCA
genomic: CGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37831976|gb|BJ589988.1|BJ589988
EST:     GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCA
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|37844050|gb|BJ602058.1|BJ602058
EST:     GTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: gi|18334318|gb|BJ166335.1|BJ166335
EST:     GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG                         GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 37

AAGGGCGTGGAACAGGGTCCTCAAGTGGACAAGGACCAGTTCCACAAGGTGCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCACCGATGTGAAAGAAGGCATGAAGATCTTCGACGAGGAGATTTTCGGACC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGGCGTGGAACAGGGTCCTCAAGTGGACAAGGACCAGTTCCACAAGGTGCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaattagcatatctacgctccattcttaattcccacaattcagtcatcgatagcatttcgaatctcctcattttctaacaagaactggggcgttggtctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA