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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGGAACCTTGAAGCGCTGGATAACTAAGGACAAAGCTTTGGACACAAGGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAAgtaagacgttttggacttgttaaattatgacatggtgtcttgttagggttgaaggtcagagtactggctaagggtcagtagtccttgtgccatgagtttc...

Basic information

species Physcomitrella patens
transcript PP1S492_4V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162169356|gb|FC345518.1|FC345518
EST:     GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAA                         GATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT
genomic: GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAAgtaagacgtt ... tttcttccagGATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT
EST: gi|22492779|gb|BU052702.1|BU052702
EST:     GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAA                         GATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT
genomic: GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAAgtaagacgtt ... tttcttccagGATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT
EST: gi|22491659|gb|BU051582.1|BU051582
EST:     GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAA                         GATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT
genomic: GGAATATAAAGATTCTGGTGTTTGACGAAGCCGATCAAATGTTCGATCAAgtaagacgtt ... tttcttccagGATGGATTTCAAGATGACTCGCTGAGGCTTTGGAGAGATATCAATAGAAGT