Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTTGAACATGCTGTCGTTCTGAGTGTGAAAATGGAGGATCAGGATGCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggttaaacatttgagtttgataatgatagggtggacagcctaggtgcttcttgcctgtcgctctcaacgtgtggttactccataaagaatccata...

Basic information

species Physcomitrella patens
transcript PP1S48_71V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360944|gb|BJ193008.1|BJ193008
EST:     GCATTCNAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATC
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATC
EST: gi|37838835|gb|BJ596843.1|BJ596843
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|37834588|gb|BJ592600.1|BJ592600
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|18363518|gb|BJ195590.1|BJ195590
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTC
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTC
EST: gi|18350863|gb|BJ182914.1|BJ182914
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|162221494|gb|FC397303.1|FC397303
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|37840652|gb|BJ598660.1|BJ598660
EST:     CATTCGAGCGTCATTTTCTTCAACTGAAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: CATTCGAGCGTCATTTTCTTCAACTG-AAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|18346080|gb|BJ178123.1|BJ178123
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|18353130|gb|BJ185185.1|BJ185185
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCANAACAAGAGTATCCTATTTTACGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|208360510|gb|DC930265.1|DC930265
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|208375002|gb|DC944797.1|DC944797
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|37825192|gb|BJ583258.1|BJ583258
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: gi|37830197|gb|BJ588209.1|BJ588209
EST:     GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG                         GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATTTTTGAACATGCTGTCGTTCTGAGTGTGAAAATGGAGGATCAGGATGCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggttaaacatttgagtttgataatgatagggtggacagcctaggtgcttcttgcctgtcgctctcaacgtgtggttactccataaagaatccata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaagaa