1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGGCGTTCGGAAGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcgtcatgctcgatccacaataattccttgaatttgaagcactcgacagtagatatgaacgctatggaggctgtgagaatgtcatactgtgattggaaaattttggctgaaggtctaacaagatgaggtctgagtggctatgcag
species | Physcomitrella patens |
transcript | PP1S48_57V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAG TTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCAEST: gi|100384943|gb|BY969678.1|BY969678
genomic: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcg ... ggctatgcagTTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCA
EST: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAG TTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCAEST: gi|18366577|gb|BJ198656.1|BJ198656
genomic: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcg ... ggctatgcagTTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCA
EST: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAG TTAACTTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCEST: gi|19787903|gb|BQ040684.1|BQ040684
genomic: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcg ... ggctatgcagTTAACTT-CGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGC
EST: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAG TTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCAEST: gi|18370166|gb|BJ201768.1|BJ201768
genomic: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcg ... ggctatgcagTTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCA
EST: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAG TTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCA
genomic: AGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcg ... ggctatgcagTTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCGTTCGGAAGTACCTGACAATGCAAGACTTGGCGAGAATCCAGGCTGAAGCTGCACAGgcaagcagcgtcatgctcgatccacaataattccttgaatttgaagcactcgacagtagatatgaacgctatggaggctgtgagaatgtcatactgtgattggaaaattttggctgaaggtctaacaagatgaggtctgagtggctatgcag
- - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC