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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACTTCGATGTTGGAACTGAACAACCTAGCTAGTCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccacaccatcttcacagtatcacagggacgttgcaaccagatctcatctccagaactctctaggacaggggtagtgtattcaacgaatggctaa...

Basic information

species Physcomitrella patens
transcript PP1S48_57V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18370166|gb|BJ201768.1|BJ201768
EST:     TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT                         TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
genomic: TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
EST: gi|37850989|gb|BJ608997.1|BJ608997
EST:     CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT                         TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
genomic: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
EST: gi|208395513|gb|DC928928.1|DC928928
EST:     TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT                         TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
genomic: TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
EST: gi|37846958|gb|BJ604966.1|BJ604966
EST:     CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT                         TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
genomic: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG