1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTCGCGCTACCGTTGTTCCTGTTTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGGgtacgtattttttactttgcagttcttcggggcacggtcgatttcagaatctggaattcctgtttcttttttcctaaattaaagaaattagttcctttca...
species | Physcomitrella patens |
transcript | PP1S48_210V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGG AACGTGGATGGGGAGTCTCGTCCAGAGAAGTCAAATCCCGCGGAGCTCAAGEST: gi|67697741|gb|BJ957974.1|BJ957974
genomic: TTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGGgtacgtattt ... tgtttttcagAACGTGGATGGGGAGTCTCGTCCAGAGAAGTCAAATCCCGCGGAGCTCAAG
EST: TTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGG AACGTGGATGGGGAGTCTCGTCCAGAGAAGTCAAATCCCGCGGAGCTCAAG
genomic: TTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGGgtacgtattt ... tgtttttcagAACGTGGATGGGGAGTCTCGTCCAGAGAAGTCAAATCCCGCGGAGCTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGCGCTACCGTTGTTCCTGTTTGCAGATTACATTGAAGCAGCCTTTTGGCCGAAACCCCGTCCTGGTTGGgtacgtattttttactttgcagttcttcggggcacggtcgatttcagaatctggaattcctgtttcttttttcctaaattaaagaaattagttcctttca
- - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaaa