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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGGCAAGCACAGCATCGGTGCTCTGTTCTGGCTGCTGGCCCGCATGGTGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtggcggtttgggagattggtggggggggggattgcgcggtgggaggggttgggatgtgaatgtggtggacgtggcgggtaatgcatggggata...

Basic information

species Physcomitrella patens
transcript PP1S48_103V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67693620|gb|BJ953853.1|BJ953853
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162256325|gb|FC432335.1|FC432335
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162222044|gb|FC398611.1|FC398611
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162236069|gb|FC412228.1|FC412228
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|18336589|gb|BJ168611.1|BJ168611
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162261862|gb|FC438386.1|FC438386
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162229521|gb|FC405868.1|FC405868
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162274933|gb|FC450584.1|FC450584
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162269858|gb|FC445388.1|FC445388
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162257037|gb|FC432776.1|FC432776
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162228208|gb|FC404924.1|FC404924
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162260986|gb|FC436899.1|FC436899
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37828542|gb|BJ586554.1|BJ586554
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37832421|gb|BJ590433.1|BJ590433
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162215617|gb|FC391683.1|FC391683
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162200638|gb|FC377847.1|FC377847
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGAT
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGAT
EST: gi|162156223|gb|FC332598.1|FC332598
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37850149|gb|BJ608157.1|BJ608157
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162259869|gb|FC436004.1|FC436004
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37829274|gb|BJ587286.1|BJ587286
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162270986|gb|FC447391.1|FC447391
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37838871|gb|BJ596879.1|BJ596879
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162224635|gb|FC401883.1|FC401883
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162228209|gb|FC404925.1|FC404925
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGA
EST: gi|162253575|gb|FC429598.1|FC429598
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162256326|gb|FC432336.1|FC432336
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162200637|gb|FC377846.1|FC377846
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162232921|gb|FC407535.1|FC407535
EST:     GGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: GGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162269653|gb|FC445586.1|FC445586
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162269859|gb|FC445389.1|FC445389
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162223267|gb|FC400236.1|FC400236
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162253576|gb|FC429599.1|FC429599
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162268481|gb|FC444354.1|FC444354
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162279726|gb|FC455634.1|FC455634
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|37846322|gb|BJ604330.1|BJ604330
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162224636|gb|FC401884.1|FC401884
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162247594|gb|FC421689.1|FC421689
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162258853|gb|FC434860.1|FC434860
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162257036|gb|FC432775.1|FC432775
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|67570351|gb|BJ943175.1|BJ943175
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGACCGTGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162234134|gb|FC410348.1|FC410348
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGCAAGGTCCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
EST: gi|162223268|gb|FC400237.1|FC400237
EST:     TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATG                         GTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA
genomic: TGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 139

CAAGGGCAAGCACAGCATCGGTGCTCTGTTCTGGCTGCTGGCCCGCATGGTGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtgg ... tgcggtacagGTTGACCTGTTCTTCTACAGGGAGCCCGATGAAGGTAAGGACCGCGAGGAAGAGGAGGGAGGAGCAGCTGAGTTCGCTGCAGTTGAATACGCGGCGCCGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGGCAAGCACAGCATCGGTGCTCTGTTCTGGCTGCTGGCCCGCATGGTGTTGCAGATGCGAGGCACGATCAGCGCCGCGCACCCATGGGACGTGATGgtgagtgtggcggtttgggagattggtggggggggggattgcgcggtgggaggggttgggatgtgaatgtggtggacgtggcgggtaatgcatggggata

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG