1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTAATGAAAGAACTCGATTCTGCCCGACATCCACGTGCTCAGGCAGATTCTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcaccacttctgctgtacaagatctaagcgtaatgcatgtgtcaagttcaatcagatgcttaaatttctcttttcgtacctctacgcactgaccatgaggcaacgcatcgaattgataagcattctattttttttgaatatatgtgaatgtcaatatgtgatcag
species | Physcomitrella patens |
transcript | PP1S48_101V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|208379608|gb|DC927105.1|DC927105
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|208345923|gb|DC921094.1|DC921094
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|208361173|gb|DC954279.1|DC954279
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162177488|gb|FC353749.1|FC353749
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|37851284|gb|BJ609292.1|BJ609292
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162273040|gb|FC449171.1|FC449171
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162273041|gb|FC449172.1|FC449172
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162280175|gb|FC455984.1|FC455984
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|18336887|gb|BJ168910.1|BJ168910
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162188134|gb|FC363900.1|FC363900
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162182407|gb|FC358006.1|FC358006
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|208382944|gb|DC927694.1|DC927694
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162177489|gb|FC353750.1|FC353750
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|162155773|gb|FC331802.1|FC331802
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCTEST: gi|37847539|gb|BJ605547.1|BJ605547
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
EST: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATG GTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
genomic: CTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcacc ... atgtgatcagGTTGATGGAGGGCTGATTTCCCCAGACGCTTGCATAAAACTTGAAATATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAATGAAAGAACTCGATTCTGCCCGACATCCACGTGCTCAGGCAGATTCTGGGGAACTCAGTGAAGGCAAAGATGTAAACTCTGGCATCTGTCACATGgtcagtcaccacttctgctgtacaagatctaagcgtaatgcatgtgtcaagttcaatcagatgcttaaatttctcttttcgtacctctacgcactgaccatgaggcaacgcatcgaattgataagcattctattttttttgaatatatgtgaatgtcaatatgtgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG