1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCGCTCGTACCAGTTTTGAAGTTAGATATAGTCCGTGGGCAATGCAAATGTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAGgtagctactgaaaggcaatcgttggtttggtccacttcattatcttcattatcttctctatctctctttgtgaatgaatattcatatacctctgcatgtt...
species | Physcomitrella patens |
transcript | PP1S487_18V6.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAG GTGGGCCTCCAGGAAACGGCAA-GGAGGG-ATGATGEST: gi|208387248|gb|DC945547.1|DC945547
genomic: GTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAGgtagctactg ... tcccatgcagGTGGGCCTCCAGGAAACGGCAAAGGAGGGGATGATG
EST: GTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAG GTGGGCCTCCAGGAAACGGCAAAGGAGGGGATGATGGAGGAGGCGATGGAN
genomic: GTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAGgtagctactg ... tcccatgcagGTGGGCCTCCAGGAAACGGCAAAGGAGGGGATGATGGAGGAGGCGATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGCTCGTACCAGTTTTGAAGTTAGATATAGTCCGTGGGCAATGCAAATGTTAAACGGATACGGAAAGAAGGATAAAAACGATTTTAAGGAGAGCACAGgtagctactgaaaggcaatcgttggtttggtccacttcattatcttcattatcttctctatctctctttgtgaatgaatattcatatacctctgcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA