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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCTGTCGCTGTTTCTGCTATTCAAGTTCTTACCGAAAGATCTGATCAACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaaccttcggacccttagtgtcgtatcttcgtgtctgattgcaccatgcgcactgtccacgacctttgaactggcacgccaggtgtagggtctggtgatctggattcgtgtagcagcgctgattggtggaattggatgcag

Basic information

species Physcomitrella patens
transcript PP1S47_5V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18357303|gb|BJ189362.1|BJ189362
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|18357467|gb|BJ189526.1|BJ189526
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|18344957|gb|BJ176998.1|BJ176998
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|100431216|gb|BY960085.1|BY960085
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCCGC-AGAATGGAACG
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCC-GCCAGAATGGAACG
EST: gi|208385887|gb|DC956725.1|DC956725
EST:     AACACTGTCCTGAC-TTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|18356652|gb|BJ188711.1|BJ188711
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAG
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAG
EST: gi|100388316|gb|BY951918.1|BY951918
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|100423679|gb|BY976504.1|BY976504
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|208389036|gb|DC937369.1|DC937369
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|162248338|gb|FC422553.1|FC422553
EST:     AACACTGTCCTAACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|67572635|gb|BJ945459.1|BJ945459
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|18343415|gb|BJ175453.1|BJ175453
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGC
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGC
EST: gi|162211220|gb|FC386932.1|FC386932
EST:     AACACTGTCCTAACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|100368970|gb|BY984964.1|BY984964
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCCGCT-GAATGGAACG
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCC-GCCAGAATGGAACG
EST: gi|18358244|gb|BJ190303.1|BJ190303
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCA
EST: gi|162242981|gb|FC417621.1|FC417621
EST:     AACACTGTCCTAACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGA
EST: gi|18375136|gb|BJ206714.1|BJ206714
EST:     AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTC                         AGCTACGATTCTTCCAGCATTGGAGCGTTT
genomic: AACACTGTCCTGACTTTGTACTTTTTTGTGCTCGGGGTTTTGGCGCTCTCgtacgtaacc ... ttggatgcagAGCTACGATTCTTCCAGCATTGGAGCGTTT