Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGCCGCAACAAGGTGGATAAAGAGAAGCTGGTGGCTGGTACTCGAGTTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAGgtgagtcttgtcatgtgaccttatggattgatctgtgcagctggaaacatcgtgaccagtaggcaggtaagcataatgtagtcttgaagttcatgcatta...

Basic information

species Physcomitrella patens
transcript PP1S47_46V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100450689|gb|CJ974389.1|CJ974389
EST:     TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAG                         GTTGACCC-GTAGTGTACAACATGCTTCATGAGGACCC-GGAAATATCAGC
genomic: TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAGgtgagtcttg ... gtgcgattagGTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
EST: gi|208398538|gb|DC912383.1|DC912383
EST:     TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAG                         GTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
genomic: TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAGgtgagtcttg ... gtgcgattagGTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
EST: gi|100405000|gb|BY991388.1|BY991388
EST:     TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAG                         GTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
genomic: TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAGgtgagtcttg ... gtgcgattagGTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
EST: gi|162269527|gb|FC445083.1|FC445083
EST:     TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAG                         GTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC
genomic: TTGCACTAGACATGACCACCCTCACAATCATGCGAGCGCTTCCTCGAGAGgtgagtcttg ... gtgcgattagGTTGACCCCGTAGTGTACAACATGCTTCATGAGGACCCCGGAAATATCAGC