1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacgattctctctccctctggaattccttacaatattggcgacgatggaagttttcagaagcaacgggaagtgtacatgccatgtgaatgcactctgctaacttgcacttcaatgccatag
species | Physcomitrella patens |
transcript | PP1S47_284V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC --G-TATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGCEST: gi|100415926|gb|BY956992.1|BY956992
genomic: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacg ... aatgccatagCAGGTATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGC
EST: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC CAGGTATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGCEST: gi|18350126|gb|BJ182177.1|BJ182177
genomic: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacg ... aatgccatagCAGGTATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGC
EST: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC --G-TATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGCEST: gi|18347797|gb|BJ179844.1|BJ179844
genomic: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacg ... aatgccatagCAGGTATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGC
EST: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC --G-TATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGC
genomic: CTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacg ... aatgccatagCAGGTATCAAGCGAAGTTGCAGCAGAATCTCATGTATTTGGCTGCCATAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAACgtaagtgacgattctctctccctctggaattccttacaatattggcgacgatggaagttttcagaagcaacgggaagtgtacatgccatgtgaatgcactctgctaacttgcacttcaatgccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA