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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGACATCTTGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtctaatctctatatgtcactaattttgaacttacttttcaacttgtaggctaataatttatttcttgggttgaaaatcccacag

Basic information

species Physcomitrella patens
transcript PP1S47_18V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196538|gb|FC375452.1|FC375452
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|162229412|gb|FC405603.1|FC405603
EST:     GGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: GGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|18355442|gb|BJ187501.1|BJ187501
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|18325007|gb|BJ157003.1|BJ157003
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|18344020|gb|BJ176059.1|BJ176059
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|162172646|gb|FC348027.1|FC348027
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|162158873|gb|FC335396.1|FC335396
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|162173166|gb|FC349233.1|FC349233
EST:     ATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: ATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|18349013|gb|BJ181062.1|BJ181062
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|162179654|gb|FC355712.1|FC355712
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: gi|18373250|gb|BJ204852.1|BJ204852
EST:     TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG                         GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT