1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTTTTAAAAGATGATGTTAAAACGGGGAGTGAGATCTTCGTTAAGAACAAGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttcagatataatcttaccaaaagatgattgaactgtttgggctgaaatgctattgaaatgggtctcattggcattggctagatcaactcatta...
species | Physcomitrella patens |
transcript | PP1S47_126V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAGEST: gi|100370689|gb|BY948467.1|BY948467
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
EST: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAGEST: gi|208349841|gb|DC905965.1|DC905965
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
EST: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTTAAAAGATGATGTTAAAACGGGGAGTGAGATCTTCGTTAAGAACAAGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttcagatataatcttaccaaaagatgattgaactgtttgggctgaaatgctattgaaatgggtctcattggcattggctagatcaactcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT