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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATCGTTTCAGAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaaaaaaagttccattttatttttattcccgacattgtgcttctctccactttactgttgtgaacaaaatacgcttacgtagatcttcgttgattcgaaacctaaatatttatttggcttcaaccccctctcgtgtgctctgttcag

Basic information

species Physcomitrella patens
transcript PP1S477_4V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67569517|gb|BJ942341.1|BJ942341
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: gi|162209672|gb|FC386171.1|FC386171
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: gi|162209671|gb|FC386170.1|FC386170
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: gi|67692786|gb|BJ953019.1|BJ953019
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: gi|208397376|gb|DC916330.1|DC916330
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: gi|208354215|gb|DC902457.1|DC902457
EST:     GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG                         GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC