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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATGTCTATATCACAAGGCTTTTCGTCAGCGGGGAGGCGTGCAGTGTCCCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgtgctctcacttagtattgtattttgaacgacaatagagaattttcttgttctaatgtgatttttggcattttcttttactgcgcgaatcaaaacggattcgagggtttatcatgcgattgtatgaattcacgatcgtggtgtgtttgtag

Basic information

species Physcomitrella patens
transcript PP1S475_17V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395911|gb|DC920333.1|DC920333
EST:     CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG                         GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: gi|162263797|gb|FC439662.1|FC439662
EST:     CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG                         GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: gi|208345867|gb|DC921066.1|DC921066
EST:     CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG                         GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: gi|100386063|gb|BY970002.1|BY970002
EST:     CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG                         GGCCCGATGG-TATTGTAATTGCATTTTCAGTTGCAGCTC
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCC-GATGGGTATTGTAATTGCATTTTCAGTTGCAGCTC