1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCATGTTGGGCGTAACGGATTTGATGAGAGGACGGAAGAGCCTAGTACTTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaattgaagtgagttgtgattggatttgtttctttgaccaaagttttctcaagtaaactgccacaatatttcatttttgggtgtcacaaacccgttatgctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatagtatttggcttgtcaagtacag
species | Physcomitrella patens |
transcript | PP1S473_1V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGACA-TTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162265407|gb|FC440733.1|FC440733
genomic: CCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: GCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162151453|gb|FC326958.1|FC326958
genomic: GCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162157013|gb|FC333375.1|FC333375
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162266183|gb|FC441920.1|FC441920
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATNTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162160847|gb|FC337669.1|FC337669
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATNTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|208358689|gb|DC942911.1|DC942911
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162265408|gb|FC440734.1|FC440734
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162185767|gb|FC362323.1|FC362323
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: CTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAEST: gi|162151452|gb|FC326957.1|FC326957
genomic: CTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
EST: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG ATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tcaagtacagATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCATGTTGGGCGTAACGGATTTGATGAGAGGACGGAAGAGCCTAGTACTTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaattgaagtgagttgtgattggatttgtttctttgaccaaagttttctcaagtaaactgccacaatatttcatttttgggtgtcacaaacccgttatgctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatagtatttggcttgtcaagtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG