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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATGTTGGGCGTAACGGATTTGATGAGAGGACGGAAGAGCCTAGTACTTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaattgaagtgagttgtgattggatttgtttctttgaccaaagttttctcaagtaaactgccacaatatttcatttttgggtgtcacaaacccgttatgctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatag

Basic information

species Physcomitrella patens
transcript PP1S473_1V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256900|gb|FC433002.1|FC433002
EST:     TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG                         TATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
EST: gi|162256899|gb|FC433001.1|FC433001
EST:     TTCCTCTGCCTTGACCGACATNTTCATCGCCTCAGTCCTGGTCACTGAAG                         TATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCATGTTGGGCGTAACGGATTTGATGAGAGGACGGAAGAGCCTAGTACTTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaattgaagtgagttgtgattggatttgtttctttgaccaaagttttctcaagtaaactgccacaatatttcatttttgggtgtcacaaacccgttatgctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG