Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCGTATGGGCAAGGAGGCCGTGCAATGGGGCCTTGTCGCTGGAGTTTACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatattttttcacaatgcggtatttacaaaatgacatgtagtaacgttcatttcggagccagtcctgatggaatagtttggaaggtatgacgtttacttatgaacgtccgactgtttgcag

Basic information

species Physcomitrella patens
transcript PP1S46_326V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278434|gb|FC454520.1|FC454520
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162265952|gb|FC442955.1|FC442955
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162279986|gb|FC456172.1|FC456172
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259016|gb|FC435127.1|FC435127
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208381670|gb|DC915536.1|DC915536
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259138|gb|FC436432.1|FC436432
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208367972|gb|DC950997.1|DC950997
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162269068|gb|FC444936.1|FC444936
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162264590|gb|FC440886.1|FC440886
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|67576061|gb|BJ948885.1|BJ948885
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTG
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTG
EST: gi|162229199|gb|FC404558.1|FC404558
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259211|gb|FC436466.1|FC436466
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|67569310|gb|BJ942134.1|BJ942134
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208395552|gb|DC928967.1|DC928967
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162272952|gb|FC449083.1|FC449083
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259139|gb|FC436433.1|FC436433
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162276798|gb|FC452792.1|FC452792
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162226856|gb|FC403044.1|FC403044
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208391705|gb|DC937937.1|DC937937
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|19784287|gb|BQ040153.1|BQ040153
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162271484|gb|FC446433.1|FC446433
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208384616|gb|DC915219.1|DC915219
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162276799|gb|FC452793.1|FC452793
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162229198|gb|FC404557.1|FC404557
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259212|gb|FC436467.1|FC436467
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162276680|gb|FC452258.1|FC452258
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|67692570|gb|BJ952803.1|BJ952803
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162271530|gb|FC446479.1|FC446479
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162245700|gb|FC419600.1|FC419600
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162226857|gb|FC403045.1|FC403045
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259912|gb|FC436047.1|FC436047
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162280258|gb|FC456275.1|FC456275
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162262668|gb|FC438463.1|FC438463
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162262669|gb|FC438464.1|FC438464
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259370|gb|FC436235.1|FC436235
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|162259852|gb|FC435987.1|FC435987
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
EST: gi|208352185|gb|DC901706.1|DC901706
EST:     ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGG                         AAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT
genomic: ACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatatt ... ctgtttgcagAAAAACGCATTGTTGGGAGGAGCCTTGACTGGAGCTGCTCTTTCTCTGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCGTATGGGCAAGGAGGCCGTGCAATGGGGCCTTGTCGCTGGAGTTTACACTGGCATGACCTACGGCATGCAAGAGGCTCGTGGTGTGCATGACTGGgtatgatattttttcacaatgcggtatttacaaaatgacatgtagtaacgttcatttcggagccagtcctgatggaatagtttggaaggtatgacgtttacttatgaacgtccgactgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG