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GAATTTCGAAGATGCCTTCGCCACGGTTTACCGTAGCTTATGCCCTGACTCCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacattatatccatttccgtattccacttatggttagagttggtttctagattcatcgcccatgattgcaagcagaaatctacggaccttcacgg...
species | Physcomitrella patens |
transcript | PP1S46_310V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|22131635|gb|BQ826715.1|BQ826715
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTEST: gi|100353527|gb|BY964851.1|BY964851
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGT
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|208370333|gb|DC931745.1|DC931745
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|208354736|gb|DC934200.1|DC934200
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|100424319|gb|BY958425.1|BY958425
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|162230406|gb|FC407074.1|FC407074
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGAEST: gi|100446301|gb|CJ970600.1|CJ970600
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
EST: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAG GTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
genomic: CCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacat ... ctgtcaccagGTCGAGGGGGATTACATTTGTGGCCCTTGATCGTAATAGAGCACTCATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTTCGAAGATGCCTTCGCCACGGTTTACCGTAGCTTATGCCCTGACTCCAAAGAAGACCCGGAGCTTCATGCAACAAAAACTGGAGGCCCAAGCCAGgttattacattatatccatttccgtattccacttatggttagagttggtttctagattcatcgcccatgattgcaagcagaaatctacggaccttcacgg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG