1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGATGGGTTCAGGAAACTTATGTGAAGACTGGTCTGTTCACATGGTCCGATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttgaaatcagatgtctagcaggatttatttatttttggttttctctctttcttcactgtgttttacctcacaaatctcatggcaaatggctatcttcattttataggcatctttctgcaatttgttactttagttttggtggaagtctagtaattttaaattaaatttggcactcggtctgtag
species | Physcomitrella patens |
transcript | PP1S46_300V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAAC-AG TTAGATAGGAGTCGCGAAAATTGGGGATTGGAGACTGTTGAACGTT-ACTAEST: gi|100428645|gb|BY959363.1|BY959363
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGA-CGTTTACTA
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAG TTAGATAGGAGTCEST: gi|208378558|gb|DC927255.1|DC927255
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTC
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAG TTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTACEST: gi|100405074|gb|BY991426.1|BY991426
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTAC
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAG TTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTACEST: gi|100419830|gb|BY957729.1|BY957729
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTAC
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAA-CCAG TTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTACEST: gi|100383469|gb|BY950253.1|BY950253
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTAC
EST: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAG TTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTAC
genomic: ATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttg ... cggtctgtagTTAGATAGGAGTCGCGAAAATTTGGGATTGGAGACTGTTGACGTTTACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGGGTTCAGGAAACTTATGTGAAGACTGGTCTGTTCACATGGTCCGATTTCGTAGCTGGATGTCACTGCATGACCCCAGCATACCTTAAAAACCAGgtgaaacttgaaatcagatgtctagcaggatttatttatttttggttttctctctttcttcactgtgttttacctcacaaatctcatggcaaatggctatcttcattttataggcatctttctgcaatttgttactttagttttggtggaagtctagtaattttaaattaaatttggcactcggtctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA