1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgtttttttttatctcctctttccattacttctttcgtaggatcttattcaacaatatcactccatgatgaccactagccgcaatgtatccaaag...
species | Physcomitrella patens |
transcript | PP1S46_248V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCNTTCTCTGEST: gi|162249473|gb|FC426743.1|FC426743
genomic: TGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67508684|gb|BJ941545.1|BJ941545
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67578233|gb|BJ950400.1|BJ950400
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67699765|gb|BJ959998.1|BJ959998
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67701100|gb|BJ961333.1|BJ961333
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67691910|gb|BJ952143.1|BJ952143
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGEST: gi|67578497|gb|BJ950664.1|BJ950664
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgtttttttttatctcctctttccattacttctttcgtaggatcttattcaacaatatcactccatgatgaccactagccgcaatgtatccaaag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG