Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S46_127V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_127V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g11110.1 (Oryza sativa), 5'ss of exon 3
GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattt-tcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcag
||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||  || |   |||| |  ||  | || || ||  ||| ||||     |||   | |   |||       |  | |    |||    |||| || |   | ||   | |  |||| |||     |   ||    ||  | |                                                                                           
GAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGgcatgt-----gatccttttttcattttcaacttgtttctgttttctcaagtcacttgtttcattgagttcaccatttatcaagtcttggttgtatatgtaagtt------------------------------------------------------------------------------------------

upper sequence: PP1S46_127V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G12220.5 (Glycine max), 5'ss of exon 3
GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctg--tgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcag
|||||| || || || |||||||| |||||||||||| ||||  ||||||| |||||||| ||||| || ||  ||||||| || ||||| || |   |  ||   |||   ||||     |  |      || | |  | |   ||||  || |||  | ||  | |   |   | |      | | || ||                                                                                           
GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgtatttggacctc---ttgcatctgt--tgtggttttaatt--ttaagcctggtgattctgattcatggtatctgtgttggagtgtggactaactatat-----------------------------------------------------------------------------------------

upper sequence: PP1S46_127V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 5'ss of exon 3
GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcag
||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||| | |||||||||||||||| |  |    |  || |||  ||| |||  | ||    | || |    |  | ||      || |    |    |      |||| ||  || ||  ||                                                                                            
GAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatat--atgcttttgtttcat-ttgagctcgtgatgtt-cttttatgaattttgtccatttctgtttgcttcgcatgtgggaagtatctagca-tgctaagga-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208392104|gb|DC949550.1|DC949550
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208372972|gb|DC940603.1|DC940603
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37826977|gb|BJ584989.1|BJ584989
EST:     CCGGGAATGAGAGGAAAGAGNCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|100399623|gb|BY972811.1|BY972811
EST:     CGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTTGA-GGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTA
genomic: CGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTT-GAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTA
EST: gi|162279433|gb|FC455549.1|FC455549
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208387774|gb|DC941343.1|DC941343
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162271212|gb|FC447175.1|FC447175
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|18339275|gb|BJ171302.1|BJ171302
EST:     CCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACNGACGCATCCTATCCGA
genomic: CCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|100364763|gb|BY947896.1|BY947896
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162272341|gb|FC448200.1|FC448200
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208374432|gb|DC941189.1|DC941189
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208364026|gb|DC950374.1|DC950374
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208383174|gb|DC928216.1|DC928216
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208348585|gb|DC913257.1|DC913257
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208380926|gb|DC903866.1|DC903866
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGTACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208360734|gb|DC946458.1|DC946458
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208371151|gb|DC955971.1|DC955971
EST:     CCGGGAACGAGAGGAAAGAGGCCGCTGACCAATCTNTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37849036|gb|BJ607044.1|BJ607044
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTNGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37847526|gb|BJ605534.1|BJ605534
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208363146|gb|DC954346.1|DC954346
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|100415554|gb|BY992898.1|BY992898
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208377301|gb|DC927017.1|DC927017
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162206622|gb|FC382380.1|FC382380
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208396773|gb|DC929068.1|DC929068
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208362580|gb|DC939504.1|DC939504
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208374603|gb|DC931956.1|DC931956
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162271211|gb|FC447174.1|FC447174
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37847911|gb|BJ605919.1|BJ605919
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCCTATCCG
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCAT-CCTATCCG
EST: gi|208366230|gb|DC943804.1|DC943804
EST:     CCGGGAATGAGAGGAAAGAGGCCGTTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208363024|gb|DC957979.1|DC957979
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208373768|gb|DC936567.1|DC936567
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37848042|gb|BJ606050.1|BJ606050
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTNGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCCTATCCG
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCAT-CCTATCCG
EST: gi|67692292|gb|BJ952525.1|BJ952525
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37840472|gb|BJ598480.1|BJ598480
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208365635|gb|DC935746.1|DC935746
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208394573|gb|DC953612.1|DC953612
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208358561|gb|DC946522.1|DC946522
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162272342|gb|FC448201.1|FC448201
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208374722|gb|DC932019.1|DC932019
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|18337354|gb|BJ169378.1|BJ169378
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|162206621|gb|FC382379.1|FC382379
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208352798|gb|DC917762.1|DC917762
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGANCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGTACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37845773|gb|BJ603781.1|BJ603781
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|37841703|gb|BJ599711.1|BJ599711
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
EST: gi|208359294|gb|DC954189.1|DC954189
EST:     CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG                         GCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA
genomic: CCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 32

GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaa ... acgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGACTGGGATTAGCTTTGAACTTCTCGGTCTTTTATTATGAAATTTTGAACT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAGgtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG