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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACCGGCTGAACATGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttctttttacaagagaaatatgtaatttagttcagttggaatgtcggacgcgtattactgtaataatcctcagtcgaagggaaagcgatgcaacct...

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162229258|gb|FC405345.1|FC405345
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162265436|gb|FC440762.1|FC440762
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208366490|gb|DC954826.1|DC954826
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|6102402|gb|AW126872.1|AW126872
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTTTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208395785|gb|DC920291.1|DC920291
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67727928|gb|BJ978187.1|BJ978187
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18336214|gb|BJ168236.1|BJ168236
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|37851300|gb|BJ609308.1|BJ609308
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTGAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67571629|gb|BJ944453.1|BJ944453
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162272674|gb|FC448300.1|FC448300
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67694980|gb|BJ955213.1|BJ955213
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67696492|gb|BJ956725.1|BJ956725
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67570210|gb|BJ943034.1|BJ943034
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18334570|gb|BJ166587.1|BJ166587
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162240647|gb|FC416278.1|FC416278
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTTGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162274139|gb|FC450211.1|FC450211
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162204084|gb|FC379453.1|FC379453
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67693479|gb|BJ953712.1|BJ953712
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162274140|gb|FC450212.1|FC450212
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162259517|gb|FC435444.1|FC435444
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|37844223|gb|BJ602231.1|BJ602231
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162265435|gb|FC440761.1|FC440761
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|15727679|gb|BI740410.1|BI740410
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18336144|gb|BJ168166.1|BJ168166
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162275611|gb|FC451327.1|FC451327
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|19779128|gb|BQ039406.1|BQ039406
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|37849932|gb|BJ607940.1|BJ607940
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162259518|gb|FC435445.1|FC435445
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162225650|gb|FC401792.1|FC401792
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATTTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162240648|gb|FC416279.1|FC416279
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18334507|gb|BJ166524.1|BJ166524
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTGAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162275612|gb|FC451328.1|FC451328
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|37833943|gb|BJ591955.1|BJ591955
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|18334613|gb|BJ166630.1|BJ166630
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162208270|gb|FC384374.1|FC384374
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|37853583|gb|BJ611591.1|BJ611591
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162215361|gb|FC391857.1|FC391857
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAG                         GCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT
genomic: TGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttcttt ... actttcgcagGCCGGAGATGCATCTGCCGAAGAGTTGTCTAGCGTGACTCAGGTCACTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACCGGCTGAACATGTACAGGGCTAAGCTGGTGGTTTTCCCAAGGCGCTCGAAGAAGACTAAGgtatttctttttacaagagaaatatgtaatttagttcagttggaatgtcggacgcgtattactgtaataatcctcagtcgaagggaaagcgatgcaacct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa