Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAACTGCTGGACCTTTACGTCCCGTGGTGCACTCTCAAACCTTGAGGTATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcag

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162229258|gb|FC405345.1|FC405345
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67573107|gb|BJ945931.1|BJ945931
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|6102402|gb|AW126872.1|AW126872
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208395785|gb|DC920291.1|DC920291
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18336214|gb|BJ168236.1|BJ168236
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18326626|gb|BJ158625.1|BJ158625
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAATTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37851300|gb|BJ609308.1|BJ609308
EST:     TAACGCCAAGATTTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: TAACGCCAAGA-TTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18327910|gb|BJ159914.1|BJ159914
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGTCCCTACAATTGGTATTGCTGNTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162272674|gb|FC448300.1|FC448300
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67694980|gb|BJ955213.1|BJ955213
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18327983|gb|BJ159987.1|BJ159987
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67696492|gb|BJ956725.1|BJ956725
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67570210|gb|BJ943034.1|BJ943034
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334570|gb|BJ166587.1|BJ166587
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162240647|gb|FC416278.1|FC416278
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTCCAATTGGTATTGCTGTGGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162274139|gb|FC450211.1|FC450211
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162204084|gb|FC379453.1|FC379453
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208366490|gb|DC954826.1|DC954826
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162265436|gb|FC440762.1|FC440762
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67693479|gb|BJ953712.1|BJ953712
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67571629|gb|BJ944453.1|BJ944453
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162259517|gb|FC435444.1|FC435444
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18352513|gb|BJ184567.1|BJ184567
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162259518|gb|FC435445.1|FC435445
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37844223|gb|BJ602231.1|BJ602231
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67727928|gb|BJ978187.1|BJ978187
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162265435|gb|FC440761.1|FC440761
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|15727679|gb|BI740410.1|BI740410
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18336144|gb|BJ168166.1|BJ168166
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGTCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162274140|gb|FC450212.1|FC450212
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18370466|gb|BJ202068.1|BJ202068
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|19779128|gb|BQ039406.1|BQ039406
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162275611|gb|FC451327.1|FC451327
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162225650|gb|FC401792.1|FC401792
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334507|gb|BJ166524.1|BJ166524
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37833943|gb|BJ591955.1|BJ591955
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18326583|gb|BJ158582.1|BJ158582
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18368398|gb|BJ200483.1|BJ200483
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334613|gb|BJ166630.1|BJ166630
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAATTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162208270|gb|FC384374.1|FC384374
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37853583|gb|BJ611591.1|BJ611591
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162215361|gb|FC391857.1|FC391857
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 104

ACCAACTGCTGGACCTTTACGTCCCGTGGTGCACTCTCAAACCTTGAGGTATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAACTGCTGGACCTTTACGTCCCGTGGTGCACTCTCAAACCTTGAGGTATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG