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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag

Basic information

species Physcomitrella patens
transcript PP1S450_9V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 2
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||||| || ||||| ||||||||||| |||||||| |||||||||||     | ||| | |||||||| |||||||| ||||||||  | ||||||||  |         |   || | ||   |     || | | ||    | |   ||| | ||     |    |   ||  |||  ||  ||  |   ||  |   || ||                                   
CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcctctcttgtctcgt-tgatctcgccctgctcttgatagtttag--tttaatcg----tgatgctatgctgaaat--ctgaacaatctagtactactagagt-----------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 5'ss of exon 2
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||||| || ||||| ||||||||||| |||||||| |||||||||||     | ||| | |||||||| |||||||| ||||||||  | ||||||||  |    |      ||  |  | | |   | |   ||      | |   ||||||   ||  |  |||        ||||||         | | | | ||||||| |  ||  ||                          
CCGCACCCACTTCGGAGGCGGCAAGTCCACCGGATTCGGCCTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcacgcatcgctcagaactttgtgccatcactctgc-----attctgaatttg---ggattgagctagcg----gaatggtgg------ttgttcgcctcagtgctcggttgtg--------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 5'ss of exon 3
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagt---tttctgtctccatcatgtggagtgcttatggtgtcgagga---gtgaaaatttgagcggtc-tcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||||| || || || ||||||||||| |||||||| ||||||||||||    | ||| | || ||||| |||||||| |||||| |  | ||||||||  ||    ||||  | |   |  |     | | |    || |   |    ||| || ||  ||  ||  ||      | ||| | |  ||   ||||| |                                                 
CCGCACCCACTTCGGTGGAGGCAAGTCCACCGGATTCGGCCTCATCTACGATAACCTCGACGCCGCGAAGAAGTACGAGCCCAAGTACCGCCTCATCAGGgtatgtatcattctagcccttgctcgccatttccctgctttgccagtgccctgtgtaatttgtagtagttgtcaaaccatttctagcaacgc---acgctaat------------------------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G091383_T01 (Zea mays), 5'ss of exon 2
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||||| || ||||| |||||||| || ||||||||||||||||||||    || ||||| |||||||| | |||||| ||||||||  | ||||||||  |  |    |   | ||  ||       || |          | || |    |  |    |  |     | |  ||  ||| || ||||| |      ||||  | |                                  
CCGCACCCACTTCGGAGGCGGCAAGTCTACCGGATTCGGTCTCATCTACGACAACGTCGACTCAGCCAAGAAGTTCGAGCCCAAGTACAGGCTTATCAGGgtatgcgtctcttgctcctcccgt-------ttttctcactcgtaattggattcataggtctccatgttgaatatactgcctgg-tatacgctgaaag---ctcaaagctt---------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G029685_T01 (Zea mays), 5'ss of exon 2
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||| | || ||||| ||||||||||| || |||||||||||||||||     ||||  | |||||||| | |||||| |||||| |  | ||||||||   |  | |||  ||              ||  |  |||   ||||| |  ||      || ||| || ||  | |   ||  |||  |       ||    |||  |  |   |  |  ||||| |               
CCGAACCAACTTCGGAGGCGGCAAGTCCACCGGCTTCGGTCTCATCTACGACAACCTTGAGGCCGCCAAGAAGTTCGAGCCCAAGTACCGCCTCATCAGGgtatatcat-tgttgcc--------------ttgcgacgtca--gagtgtagttt-----agtttcg-ctcttgacctcgctgtttacgggt----actgatgtagtaatgcgcggttga--tttggat---------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G151252_T03 (Zea mays), 5'ss of exon 2
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
| | ||||| || || || |||||||||||||| ||||| ||||||||||||    | || ||||||||||| | |||||| || ||| |  | ||||||||  ||| || | ||    | ||        |  |    |  ||   |||   | | | ||  || |  | |      ||     || |||||| | || | | ||| |                                   
CCGCACCCACTTCGGTGGAGGCAAGTCCACTGGCTTCGGCCTCATCTACGATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc-gcctggcccttgct-----ttcgttacctgtagctatgatgttataaacg--cttgattatatatacgatgttataaacgctt-gattatataagttt-----------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
  | || || ||||| ||||||||||||||||| || ||| | ||||| ||||| |||||   ||||||||| |||||||| ||||||||  | ||||||||||||| | |   ||  ||       |||   ||  ||   |  | |       |  |       | ||||| | || |||   || |||    | || |   | |  ||                                 
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttct------gtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaat---tagacgggctgtttata--aataata---------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ07954 (Selaginella moellendorffii), 5'ss of exon 3
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagc--ggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
 || ||| ||||||| || ||||||||  |||||||||||||||||||||| || || ||  |||| ||||||| |||||| || ||| |  |  |||||||||| ||   ||     | ||     | || |  |    |||| |    |  | | | |  ||| |||  ||   |                                                                     
GAGAACCAAGTTTGGCGGCGGCAAGTCGTCTGGATTCGGTCTCATCTACGACTCGGTCGAGGCTGCAAAGAAATTCGAGCCAAAATACCGTCTCGTCAGGgtgagctt--agttcttttgattctcggcgccttcg----cgagcaacagatttctcaccttggtttcgttttccattccag----------------------------------------------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ16004 (Selaginella moellendorffii), 5'ss of exon 3
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagc--ggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag
 || ||| ||||||| || ||||||||| |||||||||||||||||||||| || || ||  |||| ||||||| |||||| || ||| |  |  |||||||||| ||   ||     | ||     | || |  |    | |  |    |  | | | |  ||| |||  || | |                                                                     
GAGAACCAAGTTTGGCGGCGGCAAGTCCTCTGGATTCGGTCTCATCTACGACTCGGTCGAGGCTGCAAAGAAATTCGAGCCAAAATACCGTCTCGTCAGGgtgagctt--agttcttttgattctcggcgccttcg----caaacaacagatttctcaccttggtttcgttttctgttccag----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261085|gb|FC436946.1|FC436946
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37849254|gb|BJ607262.1|BJ607262
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67720325|gb|BJ970584.1|BJ970584
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67701835|gb|BJ962068.1|BJ962068
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGA
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGA
EST: gi|162209966|gb|FC385796.1|FC385796
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37831964|gb|BJ589976.1|BJ589976
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18362344|gb|BJ194414.1|BJ194414
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67716746|gb|BJ967006.1|BJ967006
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67712576|gb|BJ966025.1|BJ966025
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67703085|gb|BJ963318.1|BJ963318
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCA
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCA
EST: gi|18367776|gb|BJ199859.1|BJ199859
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162213390|gb|FC389067.1|FC389067
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162270208|gb|FC446284.1|FC446284
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18349465|gb|BJ181514.1|BJ181514
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAGCCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67716643|gb|BJ966903.1|BJ966903
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67569245|gb|BJ942069.1|BJ942069
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162274827|gb|FC451062.1|FC451062
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162271310|gb|FC446181.1|FC446181
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67725267|gb|BJ975526.1|BJ975526
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67570999|gb|BJ943823.1|BJ943823
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67575355|gb|BJ948179.1|BJ948179
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162209967|gb|FC385797.1|FC385797
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162241306|gb|FC416937.1|FC416937
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18364861|gb|BJ196934.1|BJ196934
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67578392|gb|BJ950559.1|BJ950559
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18352269|gb|BJ184323.1|BJ184323
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|208383593|gb|DC903550.1|DC903550
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18343862|gb|BJ175900.1|BJ175900
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67725655|gb|BJ975914.1|BJ975914
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67701284|gb|BJ961517.1|BJ961517
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37848314|gb|BJ606322.1|BJ606322
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67697255|gb|BJ957488.1|BJ957488
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37846534|gb|BJ604542.1|BJ604542
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67694304|gb|BJ954537.1|BJ954537
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67573584|gb|BJ946408.1|BJ946408
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162215279|gb|FC391047.1|FC391047
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67723967|gb|BJ974226.1|BJ974226
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18342708|gb|BJ174743.1|BJ174743
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37827706|gb|BJ585718.1|BJ585718
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162274939|gb|FC450590.1|FC450590
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162247232|gb|FC423056.1|FC423056
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37850471|gb|BJ608479.1|BJ608479
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18338963|gb|BJ170989.1|BJ170989
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162227897|gb|FC403705.1|FC403705
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67721592|gb|BJ971851.1|BJ971851
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67717133|gb|BJ967392.1|BJ967392
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67692501|gb|BJ952734.1|BJ952734
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67696970|gb|BJ957203.1|BJ957203
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37827711|gb|BJ585723.1|BJ585723
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18369181|gb|BJ201266.1|BJ201266
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCANG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162221852|gb|FC398419.1|FC398419
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67696722|gb|BJ956955.1|BJ956955
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37834640|gb|BJ592652.1|BJ592652
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37848979|gb|BJ606987.1|BJ606987
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162261084|gb|FC436945.1|FC436945
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162204520|gb|FC380812.1|FC380812
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162220281|gb|FC396312.1|FC396312
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCATG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37836124|gb|BJ594132.1|BJ594132
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162213391|gb|FC389068.1|FC389068
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67726252|gb|BJ976511.1|BJ976511
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37842061|gb|BJ600069.1|BJ600069
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67573337|gb|BJ946161.1|BJ946161
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37821854|gb|BJ579920.1|BJ579920
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18348414|gb|BJ180462.1|BJ180462
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162258722|gb|FC434521.1|FC434521
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|7648112|gb|AW739095.1|AW739095
EST:     GAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: GAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37850481|gb|BJ608489.1|BJ608489
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162274826|gb|FC451061.1|FC451061
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37828417|gb|BJ586429.1|BJ586429
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAGCCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67718904|gb|BJ969163.1|BJ969163
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|15728272|gb|BI740704.1|BI740704
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162227898|gb|FC403706.1|FC403706
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67709889|gb|BJ965705.1|BJ965705
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18349157|gb|BJ181206.1|BJ181206
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67727254|gb|BJ977513.1|BJ977513
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67573867|gb|BJ946691.1|BJ946691
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67717745|gb|BJ968004.1|BJ968004
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162220280|gb|FC396311.1|FC396311
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|15327418|gb|BI488097.1|BI488097
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67724286|gb|BJ974545.1|BJ974545
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162246684|gb|FC425277.1|FC425277
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37851888|gb|BJ609896.1|BJ609896
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|162269282|gb|FC444786.1|FC444786
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37852783|gb|BJ610791.1|BJ610791
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18348408|gb|BJ180456.1|BJ180456
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|67725163|gb|BJ975422.1|BJ975422
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|37823053|gb|BJ581119.1|BJ581119
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
EST: gi|18375201|gb|BJ206779.1|BJ206779
EST:     ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGG                         AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC
genomic: ATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 137

CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttc ... ggatgtgcagAATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGCAAGAACCGATCGAAGAAGATCAGGGGTGTGAAGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag

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