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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTCCACGCTCTGAGCGATTGCAATGTCTCATTCCGCCACCACCTGGCTATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctcaattcctcaaatctcctaattttctgaaatacatgattctcctgtcataaatattatggctttgaagggttctagatgattgcgtggcagt...

Basic information

species Physcomitrella patens
transcript PP1S43_170V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164338|gb|FC341516.1|FC341516
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|18350697|gb|BJ182748.1|BJ182748
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|162171558|gb|FC347499.1|FC347499
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|18342914|gb|BJ174950.1|BJ174950
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|18355637|gb|BJ187696.1|BJ187696
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|162169959|gb|FC345899.1|FC345899
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|208364567|gb|DC935352.1|DC935352
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|18349385|gb|BJ181434.1|BJ181434
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGG
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGG
EST: gi|162156233|gb|FC332049.1|FC332049
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|18342843|gb|BJ174879.1|BJ174879
EST:     TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: gi|100407198|gb|BY974050.1|BY974050
EST:     CTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG                         AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: CTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCTCCACGCTCTGAGCGATTGCAATGTCTCATTCCGCCACCACCTGGCTATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctcaattcctcaaatctcctaattttctgaaatacatgattctcctgtcataaatattatggctttgaagggttctagatgattgcgtggcagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG