1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GCAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtatttaatttaagtgtaaaagcgcttcatgtcttttttgatgcaaaattatatttttaaggtgacaagttaatgttacccctcctccgctccttt...
species | Physcomitrella patens |
transcript | PP1S43_166V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18349762|gb|BJ181812.1|BJ181812
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18368128|gb|BJ200213.1|BJ200213
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18357482|gb|BJ189541.1|BJ189541
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18370312|gb|BJ201914.1|BJ201914
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18364594|gb|BJ196667.1|BJ196667
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|100371663|gb|BY968088.1|BY968088
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGTEST: gi|18364941|gb|BJ197015.1|BJ197015
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
EST: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACC GTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
genomic: CAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtattt ... ttgcttgcagGTTGCCACCAAGTTTCCGGCCAACGCACTGAGCCATCGGGCGGACTTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTGTTGAGAATGGCTGCGACAAGTCGGTGGGCAATCTCCTCTACACCgtaagtatttaatttaagtgtaaaagcgcttcatgtcttttttgatgcaaaattatatttttaaggtgacaagttaatgttacccctcctccgctccttt
- - - - - - - - - - - - - - - - - - - CTCCTC