1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGGAGAAGAGGACGATATGCAGCTTCACATTGGACGGCACGTCGGTAGCTGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGGgtaagttgtgaagtccagaatgtgtggggatgcagacgcttggatgtaacgtgaaggtgttgatgaggtgactggcagtagtgtgtttgtgagtctcgag...
species | Physcomitrella patens |
transcript | PP1S438_26V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGTTCGAGTTCTTCATGG ACGATCTTCCACTTTGGGEST: gi|162179317|gb|FC356266.1|FC356266
genomic: CTGGTTCGAGTTCTTCATGGgtaagttgtg ... ggttttgcagACGATCTTCCACTTTGGG
EST: TGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGG ACGATCTTCCACTTTGGGEST: gi|67716951|gb|BJ967210.1|BJ967210
genomic: TGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGGgtaagttgtg ... ggttttgcagACGATCTTCCACTTTGGG
EST: TGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGG ACGATCTTCCACTTTGGG
genomic: TGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGGgtaagttgtg ... ggttttgcagACGATCTTCCACTTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGAAGAGGACGATATGCAGCTTCACATTGGACGGCACGTCGGTAGCTGCATTCAGATCTGCTGTGGCACAAGCTTACTGGTTCGAGTTCTTCATGGgtaagttgtgaagtccagaatgtgtggggatgcagacgcttggatgtaacgtgaaggtgttgatgaggtgactggcagtagtgtgtttgtgagtctcgag
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