1 5' 3' | 2 5' 3' | 3 5' 3' |
ACATGAAGAGGGTGGAGATGACCCCTCCAATCCTAAGGTGGAGGTCTGTACGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcacccagttggcctttgtatttgaggatgtttaagttggttagttccacttgataagtcgggattgagcgtgacggtcctcattacgaatactcgggaatgaggcagtgttgtactggcttagatcgtgcctttctcattaaacaattatgtggacttgcag
species | Physcomitrella patens |
transcript | PP1S42_138V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACAEST: gi|162179985|gb|FC356056.1|FC356056
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACAEST: gi|162169343|gb|FC345505.1|FC345505
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACAEST: gi|37848327|gb|BJ606335.1|BJ606335
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACAEST: gi|37839257|gb|BJ597265.1|BJ597265
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACAEST: gi|162153563|gb|FC329631.1|FC329631
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
EST: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAG CTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
genomic: CGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcaccca ... ggacttgcagCTTCTTTTACAAAAGAAAGAGGCAAAAGGTCCTCTTGGCCACAAAAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGAAGAGGGTGGAGATGACCCCTCCAATCCTAAGGTGGAGGTCTGTACGACTACGTTGAATGTGAAGTGGCCCAAAGGGAAGAAGGCTCAAAAACAGgtatcacccagttggcctttgtatttgaggatgtttaagttggttagttccacttgataagtcgggattgagcgtgacggtcctcattacgaatactcgggaatgaggcagtgttgtactggcttagatcgtgcctttctcattaaacaattatgtggacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG