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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCAGCTCACTGGGATACTCGAGAGCCTGCCGTTAATGCTGTCAGCCAGAACAGCACTATTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAAgtaattcctgcactaacacaccactactttcaccagattctgcgctacacaagtttttgttcactgattggtaccttgattcatttgttttcctccttag...

Basic information

species Physcomitrella patens
transcript PP1S426_3V6.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67694542|gb|BJ954775.1|BJ954775
EST:     AGAACAGCACTATTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAA                         TTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
genomic: AGAACAGCACTATTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAAgtaattcctg ... tcctcgtcagTTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
EST: gi|208381204|gb|DC923741.1|DC923741
EST:     GAACAGCACTATTTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAA                         TTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
genomic: GAACAGCACTA-TTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAAgtaattcctg ... tcctcgtcagTTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
EST: gi|208381609|gb|DC915475.1|DC915475
EST:     AGAACAGCACTATTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAA                         TTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
genomic: AGAACAGCACTATTCACGACTTTTATGGCTTCCCTCGCGAGCTATATCAAgtaattcctg ... tcctcgtcagTTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
EST: gi|37840261|gb|BJ598269.1|BJ598269
EST:     TTTTATGGCTTCCCTCGCGAGCTATATCAA                         TTGCAATACACGCNTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT
genomic: TTTTATGGCTTCCCTCGCGAGCTATATCAAgtaattcctg ... tcctcgtcagTTGCAATACACGCCTCCAGGGGCTCCAGACGTTGCAAAGAGGGTGACATCT