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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCCTGCTGATTGTGTCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTGgtaatattatccctattatagtctgacgaagttgtggggttgtattacagacttcttgacaaaagccatacgcttttgttcagaggtccctgctgatggttcgtctgtttggggtctttcgacctgctgctggtcttcagagaacatttccacaagggtaatctaactttttatggggttggaaattcag

Basic information

species Physcomitrella patens
transcript PP1S425_16V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384789|gb|DC907402.1|DC907402
EST:     TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTG                         GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
genomic: TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTGgtaatattat ... ggaaattcagGTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
EST: gi|162186160|gb|FC361364.1|FC361364
EST:     TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTG                         GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
genomic: TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTGgtaatattat ... ggaaattcagGTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
EST: gi|100442509|gb|BY963203.1|BY963203
EST:     TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTG                         GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
genomic: TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTGgtaatattat ... ggaaattcagGTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
EST: gi|162265882|gb|FC442885.1|FC442885
EST:     TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTG                         GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT
genomic: TCTCGTTGGCATTGACATCGTCTATTTTCCCATGGGCGAAACCGACCTTGgtaatattat ... ggaaattcagGTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT