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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcacttgaaacgcttagaattggcagtaacgtgtattcaaacttgagtgtggcagaagctagtacttcgatacagtttagcagtgattgaaacttttgttttaaatttgcag

Basic information

species Physcomitrella patens
transcript PP1S41_304V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842439|gb|BJ600447.1|BJ600447
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|6167659|gb|AW145923.1|AW145923
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162206214|gb|FC382284.1|FC382284
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|208398384|gb|DC916467.1|DC916467
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67719834|gb|BJ970093.1|BJ970093
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37844913|gb|BJ602921.1|BJ602921
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67692429|gb|BJ952662.1|BJ952662
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67569183|gb|BJ942007.1|BJ942007
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19782800|gb|BQ039918.1|BQ039918
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67695840|gb|BJ956073.1|BJ956073
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19790836|gb|BQ042081.1|BQ042081
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCATGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37822492|gb|BJ580558.1|BJ580558
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18328502|gb|BJ160507.1|BJ160507
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37839676|gb|BJ597684.1|BJ597684
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18362382|gb|BJ194452.1|BJ194452
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162244690|gb|FC424618.1|FC424618
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18374348|gb|BJ205926.1|BJ205926
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162245640|gb|FC423323.1|FC423323
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18343896|gb|BJ175934.1|BJ175934
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162236574|gb|FC413149.1|FC413149
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18336730|gb|BJ168753.1|BJ168753
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162244689|gb|FC424617.1|FC424617
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|15261621|gb|BI436931.1|BI436931
EST:     TGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: TGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162206556|gb|FC382925.1|FC382925
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67572959|gb|BJ945783.1|BJ945783
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162279100|gb|FC455439.1|FC455439
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19790377|gb|BQ041841.1|BQ041841
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67694866|gb|BJ955099.1|BJ955099
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67578315|gb|BJ950482.1|BJ950482
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162238058|gb|FC414248.1|FC414248
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67572468|gb|BJ945292.1|BJ945292
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18356295|gb|BJ188354.1|BJ188354
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37828652|gb|BJ586664.1|BJ586664
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67728094|gb|BJ978353.1|BJ978353
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162232853|gb|FC407506.1|FC407506
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18343290|gb|BJ175328.1|BJ175328
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37833227|gb|BJ591239.1|BJ591239
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|18365237|gb|BJ197311.1|BJ197311
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19782143|gb|BQ039816.1|BQ039816
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162202374|gb|FC379993.1|FC379993
EST:     GAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67696341|gb|BJ956574.1|BJ956574
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162203716|gb|FC378591.1|FC378591
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|37823089|gb|BJ581155.1|BJ581155
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67701193|gb|BJ961426.1|BJ961426
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162238059|gb|FC414249.1|FC414249
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162236575|gb|FC413150.1|FC413150
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19780736|gb|BQ039607.1|BQ039607
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|19789619|gb|BQ041413.1|BQ041413
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|67571525|gb|BJ944349.1|BJ944349
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
EST: gi|162203717|gb|FC378592.1|FC378592
EST:     GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG                         CTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT
genomic: GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 41

GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcactt ... aaatttgcagCTAGGTACACTGTCCGTTCTTTCGGAATCAGGCGTAATGAGAAGATTGCATGCTACGTGACTGTGCGTGGTGAAAAAGCCATGCAGCTTTTGGAGAGTGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGGgtgagcacttgaaacgcttagaattggcagtaacgtgtattcaaacttgagtgtggcagaagctagtacttcgatacagtttagcagtgattgaaacttttgttttaaatttgcag

-  TTGGAG
- -  GGAGCA