1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCGAGGACATGTACAGAGATGGCATCCGGCACATCACCTGCACGGATTTGTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaactccgtcccagttccgtcacttgtaaattctcctacacgtttgtgaaccaattgtcgccgaatttctattgcatcggactagctcactcgtcaattacgctgatggccag
species | Physcomitrella patens |
transcript | PP1S41_202V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|100438774|gb|BY961796.1|BY961796
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|162180625|gb|FC356982.1|FC356982
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|67577757|gb|BJ949924.1|BJ949924
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|100436243|gb|BY979451.1|BY979451
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|18365754|gb|BJ197831.1|BJ197831
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|208352453|gb|DC910181.1|DC910181
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAG GTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGAEST: gi|208353897|gb|DC914065.1|DC914065
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
EST: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAN GTATGGTANCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACNAGA
genomic: GTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaac ... tgatggccagGTATGGTAGCTGCGGAAGCCGACATGCTGAACTTGCCTTTCGACGACGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGAGGACATGTACAGAGATGGCATCCGGCACATCACCTGCACGGATTTGTCGACAGTGGCCGTGGAGCGAATGCGGGAGCGGTTCGTCGATCTACCAGgtcctccaactccgtcccagttccgtcacttgtaaattctcctacacgtttgtgaaccaattgtcgccgaatttctattgcatcggactagctcactcgtcaattacgctgatggccag
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