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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgtattcatcagttgtgcacaatggagagcctcagtgcattgtaacacgattgatttgatttttgaaacaatttctattcctcgatctgattgt...

Basic information

species Physcomitrella patens
transcript PP1S41_177V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192525|gb|FC368635.1|FC368635
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|18345999|gb|BJ178042.1|BJ178042
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|162230102|gb|FC406250.1|FC406250
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|18344702|gb|BJ176743.1|BJ176743
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|208350063|gb|DC910298.1|DC910298
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCGATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|162263739|gb|FC439638.1|FC439638
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|100353603|gb|BY964889.1|BY964889
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|208354187|gb|DC902443.1|DC902443
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|100389012|gb|BY952216.1|BY952216
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
EST: gi|67569370|gb|BJ942194.1|BJ942194
EST:     CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG                         TGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC
genomic: CGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgta ... atttgtgcagTGCAAGGAAAGTGGGAGCAGACTTCCAAATCAATTGAATTGCTGGACCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTGgtaagttgtattcatcagttgtgcacaatggagagcctcagtgcattgtaacacgattgatttgatttttgaaacaatttctattcctcgatctgattgt

- - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG