1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCGCATTTTCTGCTGGGGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagattttttttctgattaacgtccagtctccttgaagcatctgtcagttgagatagctcgtctagaatcatgttttgaaattggtgctcttcttgtt...
species | Physcomitrella patens |
transcript | PP1S41_163V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATG ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagatttt ... gccattgtagATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCANGGAANAAACATG CEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagatttt ... gccattgtag-
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCANGGAANAAACATG CEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagatttt ... gccattgtag-
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCANGGAANAAACATG CEST: gi|100355722|gb|BY965113.1|BY965113
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagatttt ... gccattgtag-
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGCCATTGTAGEST: gi|100420676|gb|BY993459.1|BY993459
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAG-AA-A---CA---T-Ggtaagatttt ... gc
EST: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATG ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG
genomic: GGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagatttt ... gccattgtagATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCGCATTTTCTGCTGGGGTGGCTGTAGCTCAGTTCAGGATAGATTTATTATCAAGGAAGAAACATGgtaagattttttttctgattaacgtccagtctccttgaagcatctgtcagttgagatagctcgtctagaatcatgttttgaaattggtgctcttcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA