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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGCTCTTCATGGGCAACTTGGCGTGCCAGTATGCATGGCCGTTCGTGGGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGCAGgtgcatgttattctcatgttgaccctcaattagctagaccctttttagaacacattagtagcttcaaatcccaactgagaacgcaaattctcctctcggc...

Basic information

species Physcomitrella patens
transcript PP1S41_115V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100436007|gb|BY979333.1|BY979333
EST:     GGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGGCAG                         GAACCACCATGAATTA
genomic: GGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGG-CAGgtgcatgtta ... tgtgctgcagGAACCACCATGAATTA
EST: gi|100383771|gb|BY969300.1|BY969300
EST:     GGGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGCAG                         GAACCACCATGAATTATTTTTTAGACGATCGGATCAATCGAGCGGAGGTTT
genomic: GGGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGCAGgtgcatgtta ... tgtgctgcagGAACCACCATGAATTATTTTTTAGACGATCGGATCAATCGAGCGGAGGTTT
EST: gi|100439700|gb|BY962064.1|BY962064
EST:     GGGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGCAG                         GAACCACCATGAATTATTTTTTAGACGATCGGATCAATCGAGCGGAGGTTT
genomic: GGGGCTCTCCGTTACCGAAGTGGTCTCTGCAAGCATCACGGTTGTGGCAGgtgcatgtta ... tgtgctgcagGAACCACCATGAATTATTTTTTAGACGATCGGATCAATCGAGCGGAGGTTT