1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCACCGTTTGTGTCTATGGTGGAGCCCCTTACGGGCCACAAGAGAATGCTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgagttttcattcgtgtgatttattatttcttggactactacatccaagataatggacgatttcagtcatgttatcttaaactttggttttgggctaatgcgtttttaacttgcctag
species | Physcomitrella patens |
transcript | PP1S40_169V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATAEST: gi|162165912|gb|FC341262.1|FC341262
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATAEST: gi|162166233|gb|FC342631.1|FC342631
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATAEST: gi|162201473|gb|FC377407.1|FC377407
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATAEST: gi|162167302|gb|FC342290.1|FC342290
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATAEST: gi|162163230|gb|FC339348.1|FC339348
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
EST: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAG GATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
genomic: CTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgag ... acttgcctagGATCACTTGGAGCGGGGCGGATTGAATCTGAAGTCCTTGAAGTTTCGTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCACCGTTTGTGTCTATGGTGGAGCCCCTTACGGGCCACAAGAGAATGCTCTAAGGAGAGGTGTTGATATCGTCGTCGGCACTCCTGGTCGAATCAAGgtagtgtgagttttcattcgtgtgatttattatttcttggactactacatccaagataatggacgatttcagtcatgttatcttaaactttggttttgggctaatgcgtttttaacttgcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG