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CCGGCTGCAAGCACTAGGGAGAATGTTGGTGCAAAACCAGGAGATAATGGACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattgatactttaagttttaatcactttctatcgagttatttttttatagtgtttagtgtttgtgattacgttaaatttgtgtatctttacggctt...
species | Physcomitrella patens |
transcript | PP1S402_49V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGEST: gi|100355821|gb|BY965163.1|BY965163
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAG
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTCEST: gi|162277474|gb|FC453001.1|FC453001
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTCEST: gi|18352331|gb|BJ184385.1|BJ184385
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTCEST: gi|18328634|gb|BJ160639.1|BJ160639
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTCEST: gi|162178389|gb|FC355211.1|FC355211
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTCEST: gi|18342068|gb|BJ174103.1|BJ174103
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
EST: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAG GACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
genomic: ACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattga ... gtgttttcagGACCAGCATCTGGAAAAGGAGGAGGCAAGCAACTTGCATTGGTGCCTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCTGCAAGCACTAGGGAGAATGTTGGTGCAAAACCAGGAGATAATGGACTCCAAAGCTTGCGAGTCCCTGGCTCAGAGCAGCCTACTACAAATGCAGgtataattgatactttaagttttaatcactttctatcgagttatttttttatagtgtttagtgtttgtgattacgttaaatttgtgtatctttacggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG