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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

Basic information

species Physcomitrella patens
transcript PP1S400_33V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
|||||||||||||  | |||  ||| ||||| |||||||||||||||||||||||| | ||||||||| | || || || |||||||| || || ||||||||                | ||||       | ||  ||   || |   ||   |  |  |  | || |  ||| | |         |  | | ||||||
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgta----------------aatcttg-----cttctcatttgatgaaat-gaggctactgacacatccatgctctaattc--------tgatatgttacag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
                 |||   || || || |||||||||||||||||||||||| | ||||| ||| | ||||| || |||||||| || || ||||||||  |    ||           |    | |||   |||||    ||    |  || ||  |  | |  |  ||| | |||||  | |             
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttt---tgttcggatgataccaggttattgacacatctgtgatctaa-ttgtgtttcag------------

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
|||||||||| ||  | |||   || || || |||||||||||||||||||||||| | ||||| ||| | ||||| || |||||||| || || ||||||||  |    ||           |    | |||   |||||    ||    |  || ||  |  | |  |  ||| | |||||  | |             
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttt---tgttcggatgataccaggttattgacacatctgtgatctaa-ttgtgtttcag------------

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 3
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
|||||||||| ||  | |||   ||||| || |||||||| ||||||||||||||| | || ||||||||||| ||||| |||||||| || || |||||||||  |||  | | |    |      | ||||  ||||| |||        |  ||  ||   |   || | || | |  |||  ||||||| |  ||||
TCACCACTGGTGCCAGGGAGAGCGCTTTCAGGAACATCAAAACCATTGCTGAGTGCCTTGCAGATGAGTTGATCAACGCTGCCAAGGGCTCTTCCAACAGgtatatata--tcctgtctggct----atatttggttgtttttt----tcctatctgcgatgtgaa--ttgtgctcattcatgg-caattcttgtc-acag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
| || || || || || ||  ||||||| |||||||||||||| |||||||| ||||||||||||||  | ||||| ||||| || ||||| || |||||||||   |  | ||       |    |   | |||   || | ||  | |    |  || |  |    ||  | |  ||    |  | | || | || |||
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtac--attttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G26840.1 (Glycine max), 5'ss of exon 4
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
| || || || || || ||  ||||||| |||||||||||||| |||||||| |||||||| |||||  | ||||| |||||||| ||||| || || ||||||   |    |     |    ||  ||||  | || |  ||   |    ||||| || |  |    ||||  ||| |      || ||||   || |||
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGgtatacttttgcaatcctattcatttaacatacatttttgtttgtcattttaaatttttttgttgg--ttttgttgaat----aatatttctcaatttcag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 4
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctacccttt--ttctgacttgtgggtaatt---cttttttacag---------------------
| || ||||| ||||| ||  ||||||| ||||| || ||||| |||||||| ||||||||||||||  | ||||| ||||| || || || || |||||||||    | ||   ||||    ||| |  |  |    || | ||  | |     | || | |  | ||||  || |   || | |||  ||    |||||||| |                     
TAACAACTGGTGCACGCGAAGCTGCTTTCAGAAATATTAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCGTCCAACAGgtat----acttctaggaa----ttctatgtggaggcattttctgatgtattttattttcttcatctctttcatttttttttattggtgtttgggtttttttaccgaaaaataatactccatttcag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatt-tacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag
| |||||||| || || ||  ||||||| |||||||||||||| || ||||||||| | |||||||| ||||| |||||||||||||| || || ||||||||   | | || |   || | ||||   ||| | | | |   ||  ||   |  |  | ||   ||   | || || ||||  |                 
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttcca--aatgacttcactattgttcatataacttaaagtgaagctaatgattgaac---tgttatgtcttgcag-----------------

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaa-attgttatcctaccctttttctgacttgtgggtaattcttttttacag
| || ||||| ||||| ||  |||| ||||||||||||||||| || ||||||||| | ||||||||  | || || || || ||||| || || |||||||| ||| | |          ||| |    | |   | ||  | |   ||    |||||||           |  | | | |    |  |  | | || |||
TTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGgtaagaacactct-------atctacatagtctgtctcttgatggcttcactttattgttagttagttaagctaataa-tagcatcttctcttgtcttgcag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatga------------atagttacgggaaagtcttcgacatttacttgttct--ttggagcagaaattgttatcctaccct--ttttctgacttgt-gggtaattcttttttacag--------------
|||| ||||| || || |||||||| || || ||||||||||| || ||||| |||||||| |||||  | ||||||||||| |||||||| || ||||||||  |            |||  |   | ||| | |    || | | |   |||  ||  ||       ||||  ||||  ||  | || | |  ||| || | | | | || ||                 
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgtt-ccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttat----cctaccctttttctgacttgtgggtaattcttttttacag-
  ||||||||||| || ||| | || ||  | ||||||||||||||||| |||||| ||||||| ||| || | ||||| |||||||| || || |||||||  |      | ||    ||    |||          ||    |   ||||    |   |    |   |     |  || |  || ||| |  | |      |  
--ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385606|gb|DC948965.1|DC948965
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162204682|gb|FC380896.1|FC380896
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|37823857|gb|BJ581923.1|BJ581923
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162226409|gb|FC402402.1|FC402402
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162224908|gb|FC401116.1|FC401116
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162246678|gb|FC425271.1|FC425271
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162258529|gb|FC434744.1|FC434744
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|208357916|gb|DC934835.1|DC934835
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162224019|gb|FC400377.1|FC400377
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCNAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67724322|gb|BJ974581.1|BJ974581
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67698472|gb|BJ958705.1|BJ958705
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67728065|gb|BJ978324.1|BJ978324
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67719803|gb|BJ970062.1|BJ970062
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|37839693|gb|BJ597701.1|BJ597701
EST:     TGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: TGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162204683|gb|FC380897.1|FC380897
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67693895|gb|BJ954128.1|BJ954128
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67717985|gb|BJ968244.1|BJ968244
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162237857|gb|FC412497.1|FC412497
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCNAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162224018|gb|FC400376.1|FC400376
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162237856|gb|FC412496.1|FC412496
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162246677|gb|FC425270.1|FC425270
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162258530|gb|FC434745.1|FC434745
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67700132|gb|BJ960365.1|BJ960365
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|37851079|gb|BJ609087.1|BJ609087
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|208373799|gb|DC936584.1|DC936584
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|208364071|gb|DC950391.1|DC950391
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|162224907|gb|FC401115.1|FC401115
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|67720612|gb|BJ970871.1|BJ970871
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
EST: gi|37852163|gb|BJ610171.1|BJ610171
EST:     GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAG                         CTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG
genomic: GAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 20

TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatag ... ttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCGTTAAGCTAGTTTCACGATGGTTCTTGGATTCAGGAGTCCTTTAAAGTTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT