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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTGCAGATTAAGGTGGACGATAAGACTGGGGAAATAGTTGACGCTTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcattaagccatattttctgattgttaaggtgtgttgtacccacacggtgaggtcctgaatctgcttaattggaggtttattaccgatcgtttt...

Basic information

species Physcomitrella patens
transcript PP1S39_352V6.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325321|gb|BJ157317.1|BJ157317
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|18358277|gb|BJ190336.1|BJ190336
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|208364508|gb|DC930898.1|DC930898
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|100367222|gb|BY984845.1|BY984845
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|18372939|gb|BJ204541.1|BJ204541
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCANAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|18363292|gb|BJ195364.1|BJ195364
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|18330965|gb|BJ162971.1|BJ162971
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|100401447|gb|BY991007.1|BY991007
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162269290|gb|FC445821.1|FC445821
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162232570|gb|FC408913.1|FC408913
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|100445500|gb|CJ975649.1|CJ975649
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162236415|gb|FC412782.1|FC412782
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|67573048|gb|BJ945872.1|BJ945872
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162273917|gb|FC450056.1|FC450056
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|67696431|gb|BJ956664.1|BJ956664
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162240735|gb|FC417458.1|FC417458
EST:     TTGTTTTAAGACCTTCGTTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|18332343|gb|BJ164356.1|BJ164356
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|162240736|gb|FC417459.1|FC417459
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA
EST: gi|100442006|gb|BY981229.1|BY981229
EST:     TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGG                         CTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGGAGCCGTGAGTATCAGAA
genomic: TTGTTTTAAGACCTTCGGTTGTGGTTCTGCCATAGCTTCATCATCTGTGGgtatgttcat ... gtggttgtagCTTCTGAGTGGATCAAGGGGAAGCCTATGGAGGAAGCCGTGAGTATCAGAA