1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaacctactttcattgctttggttcttcatttttgggacggtacgcagtgaattgtggatcttgattttttgtgcaggattctcgcatgtgcta...
species | Physcomitrella patens |
transcript | PP1S39_347V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|7067446|gb|AW497301.1|AW497301
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|7286872|gb|AW599359.1|AW599359
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: TGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|19785617|gb|BQ040349.1|BQ040349
genomic: TGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|67697970|gb|BJ958203.1|BJ958203
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|67727381|gb|BJ977640.1|BJ977640
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|208365548|gb|DC954789.1|DC954789
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|67693026|gb|BJ953259.1|BJ953259
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|7583925|gb|AW699826.1|AW699826
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|7148045|gb|AW509967.1|AW509967
genomic: CGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|208395764|gb|DC924230.1|DC924230
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|67726029|gb|BJ976288.1|BJ976288
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|208368061|gb|DC947621.1|DC947621
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|208350967|gb|DC925972.1|DC925972
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|22492653|gb|BU052576.1|BU052576
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: GCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCTEST: gi|208359388|gb|DC954241.1|DC954241
genomic: GCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
EST: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGG TGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
genomic: CGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaac ... acctcgatagTGCCGGCTGCATGAGTTAGCGAACAAGAGGCGCATTTCAGTGACTGGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaacctactttcattgctttggttcttcatttttgggacggtacgcagtgaattgtggatcttgattttttgtgcaggattctcgcatgtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT